Software

FastSMC

FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the age of IBD segments and scales to large biobank datasets.

[software] [paper] [data]

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ASMC

The Ascertained Sequentially Markovian Coalescent is a method to efficiently estimate pairwise coalescence times along the genome. It can be run using SNP array or whole-genome sequencing (WGS) data.

[software] [manual] [paper] [data]

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ARGON

ARGON is a fast simulator of genetic data that samples from the discrete time Wright-Fisher process (DTWF) backwards in time.

[software] [paper]

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IBDmut

IBDmut estimates mutation and non-crossover gene conversion rates using identical-by-descent (IBD) segments shared by distant relatives within a population.

[software] [paper]

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DoRIS

DoRIS is a tool for reconstructing fine-scale demographic events that occurred in the very recent past (e.g. ~100 generations) of one or multiple populations.

[software] [paper 1] [paper 2]

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