HapNe

HapNe is a method to reconstruct recent past demographic fluctuations in modern and ancient data.

Links

• Source and manual (Github)
• Binaries (PyPi)

Papers

Haplotype-based inference of recent effective population size in modern and ancient DNA samples. R. Fournier, Z. Tsangalidou, D. Reich, P. Palamara. Nature Communications. December 2023. [paper]